brain age
Poor Sleep Quality Accelerates Brain Aging
Research shows that people who sleep poorly tend to have brain age that is older than their actual age. Chronic inflammation in the body caused by poor sleep likely plays a part. While the link between poor sleep and dementia has long been known, it was unclear whether poor sleep habits could cause dementia or whether poor sleep was an early symptom of dementia. However, new research has revealed that sleep quality may have a direct impact on the rate at which the brain ages . Our findings provide evidence that poor sleep may contribute to accelerated brain aging, explains Abigail Dove, a neuroepidemiologist at the Karolinska Institute in Sweden, and point to inflammation as one of the underlying mechanisms.
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A Brain Age Residual Biomarker (BARB): Leveraging MRI-Based Models to Detect Latent Health Conditions in U.S. Veterans
Bousquet, Arthur, Banerji, Sugata, Conneely, Mark F., Jamshidi, Shahrzad
Age prediction using brain imaging, such as MRIs, has achieved promising results, with several studies identifying the model's residual as a potential biomarker for chronic disease states. In this study, we developed a brain age predictive model using a dataset of 1,220 U.S. veterans (18--80 years) and convolutional neural networks (CNNs) trained on two-dimensional slices of axial T2-weighted fast spin-echo and T2-weighted fluid attenuated inversion recovery MRI images. The model, incorporating a degree-3 polynomial ensemble, achieved an $R^{2}$ of 0.816 on the testing set. Images were acquired at the level of the anterior commissure and the frontal horns of the lateral ventricles. Residual analysis was performed to assess its potential as a biomarker for five ICD-coded conditions: hypertension (HTN), diabetes mellitus (DM), mild traumatic brain injury (mTBI), illicit substance abuse/dependence (SAD), and alcohol abuse/dependence (AAD). Residuals grouped by the number of ICD-coded conditions demonstrated different trends that were statistically significant ($p = 0.002$), suggesting a relationship between disease states and predicted brain age. This association was particularly pronounced in patients over 49 years, where negative residuals (indicating advanced brain aging) correlated with the presence of multiple ICD codes. These findings support the potential of residuals as biomarkers for detecting latent health conditions.
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Brain Ageing Prediction using Isolation Forest Technique and Residual Neural Network (ResNet)
Behzadi, Saadat, Sharifrazi, Danial, Alizadehsani, Roohallah, Lotfaliany, Mojtaba, Mohebbi, Mohammadreza
Brain aging is a complex and dynamic process, leading to functional and structural changes in the brain. These changes could lead to the increased risk of neurodegenerative diseases and cognitive decline. Accurate brain-age estimation utilizing neuroimaging data has become necessary for detecting initial signs of neurodegeneration. Here, we propose a novel deep learning approach using the Residual Neural Network 101 Version 2 (ResNet101V2) model to predict brain age from MRI scans. To train, validate and test our proposed model, we used a large dataset of 2102 images which were selected randomly from the International Consortium for Brain Mapping (ICBM). Next, we applied data preprocessing techniques, including normalizing the images and using outlier detection via Isolation Forest method. Then, we evaluated various pre-trained approaches (namely: MobileNetV2, ResNet50V2, ResNet101V2, Xception). The results demonstrated that the ResNet101V2 model has higher performance compared with the other models, attaining MAEs of 0.9136 and 0.8242 years for before and after using Isolation Forest process. Our method achieved a high accuracy in brain age estimation in ICBM dataset and it provides a reliable brain age prediction.
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Reframing the Brain Age Prediction Problem to a More Interpretable and Quantitative Approach
Gianchandani, Neha, Dibaji, Mahsa, Bento, Mariana, MacDonald, Ethan, Souza, Roberto
Deep learning models have achieved state-of-the-art results in estimating brain age, which is an important brain health biomarker, from magnetic resonance (MR) images. However, most of these models only provide a global age prediction, and rely on techniques, such as saliency maps to interpret their results. These saliency maps highlight regions in the input image that were significant for the model's predictions, but they are hard to be interpreted, and saliency map values are not directly comparable across different samples. In this work, we reframe the age prediction problem from MR images to an image-to-image regression problem where we estimate the brain age for each brain voxel in MR images. We compare voxel-wise age prediction models against global age prediction models and their corresponding saliency maps. The results indicate that voxel-wise age prediction models are more interpretable, since they provide spatial information about the brain aging process, and they benefit from being quantitative.
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Transferability of coVariance Neural Networks and Application to Interpretable Brain Age Prediction using Anatomical Features
Sihag, Saurabh, Mateos, Gonzalo, McMillan, Corey T., Ribeiro, Alejandro
Graph convolutional networks (GCN) leverage topology-driven graph convolutional operations to combine information across the graph for inference tasks. In our recent work, we have studied GCNs with covariance matrices as graphs in the form of coVariance neural networks (VNNs) that draw similarities with traditional PCA-driven data analysis approaches while offering significant advantages over them. In this paper, we first focus on theoretically characterizing the transferability of VNNs. The notion of transferability is motivated from the intuitive expectation that learning models could generalize to "compatible" datasets (possibly of different dimensionalities) with minimal effort. VNNs inherit the scale-free data processing architecture from GCNs and here, we show that VNNs exhibit transferability of performance over datasets whose covariance matrices converge to a limit object. Multi-scale neuroimaging datasets enable the study of the brain at multiple scales and hence, can validate the theoretical results on the transferability of VNNs. To gauge the advantages offered by VNNs in neuroimaging data analysis, we focus on the task of "brain age" prediction using cortical thickness features. In clinical neuroscience, there has been an increased interest in machine learning algorithms which provide estimates of "brain age" that deviate from chronological age. We leverage the architecture of VNNs to extend beyond the coarse metric of brain age gap in Alzheimer's disease (AD) and make two important observations: (i) VNNs can assign anatomical interpretability to elevated brain age gap in AD, and (ii) the interpretability offered by VNNs is contingent on their ability to exploit specific principal components of the anatomical covariance matrix. We further leverage the transferability of VNNs to cross validate the above observations across different datasets.
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Efficient brain age prediction from 3D MRI volumes using 2D projections
Jönemo, Johan, Akbar, Muhammad Usman, Kämpe, Robin, Hamilton, J Paul, Eklund, Anders
Using 3D CNNs on high resolution medical volumes is very computationally demanding, especially for large datasets like the UK Biobank which aims to scan 100,000 subjects. Here we demonstrate that using 2D CNNs on a few 2D projections (representing mean and standard deviation across axial, sagittal and coronal slices) of the 3D volumes leads to reasonable test accuracy when predicting the age from brain volumes. Using our approach, one training epoch with 20,324 subjects takes 20 - 50 seconds using a single GPU, which two orders of magnitude faster compared to a small 3D CNN. These results are important for researchers who do not have access to expensive GPU hardware for 3D CNNs.
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How Old Is Your Brain, Really? - Neuroscience News
Summary: Deep learning technology can accurately reflect a person's risk of cognitive decline and Alzheimer's disease based on brain age. The human brain holds many clues about a person's long-term health -- in fact, research shows that a person's brain age is a more useful and accurate predictor of health risks and future disease than their birthdate. Now, a new artificial intelligence (AI) model that analyzes magnetic resonance imaging (MRI) brain scans developed by USC researchers could be used to accurately capture cognitive decline linked to neurodegenerative diseases like Alzheimer's much earlier than previous methods. Brain aging is considered a reliable biomarker for neurodegenerative disease risk. Such risk increases when a person's brain exhibits features that appear "older" than expected for someone of that person's age.
How old is your brain, really? AI-powered analysis accurately reflects risk of cognitive decline and Alzheimer's disease
The human brain holds many clues about a person's long-term health--in fact, research shows that a person's brain age is a more useful and accurate predictor of health risks and future disease than their birthdate. Now, a new artificial intelligence (AI) model that analyzes magnetic resonance imaging (MRI) brain scans developed by USC researchers could be used to accurately capture cognitive decline linked to neurodegenerative diseases like Alzheimer's much earlier than previous methods. Brain aging is considered a reliable biomarker for neurodegenerative disease risk. Such risk increases when a person's brain exhibits features that appear "older" than expected for someone of that person's age. By tapping into the deep learning capability of the team's novel AI model to analyze the scans, the researchers can detect subtle brain anatomy markers that are otherwise very difficult to detect and that correlate with cognitive decline.
Predicting Brain Age using Transferable coVariance Neural Networks
Sihag, Saurabh, Mateos, Gonzalo, McMillan, Corey, Ribeiro, Alejandro
The deviation between chronological age and biological age is a well-recognized biomarker associated with cognitive decline and neurodegeneration. Age-related and pathology-driven changes to brain structure are captured by various neuroimaging modalities. These datasets are characterized by high dimensionality as well as collinearity, hence applications of graph neural networks in neuroimaging research routinely use sample covariance matrices as graphs. We have recently studied covariance neural networks (VNNs) that operate on sample covariance matrices using the architecture derived from graph convolutional networks, and we showed VNNs enjoy significant advantages over traditional data analysis approaches. In this paper, we demonstrate the utility of VNNs in inferring brain age using cortical thickness data. Furthermore, our results show that VNNs exhibit multi-scale and multi-site transferability for inferring {brain age}. In the context of brain age in Alzheimer's disease (AD), our experiments show that i) VNN outputs are interpretable as brain age predicted using VNNs is significantly elevated for AD with respect to healthy subjects for different datasets; and ii) VNNs can be transferable, i.e., VNNs trained on one dataset can be transferred to another dataset with different dimensions without retraining for brain age prediction.
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A reusable benchmark of brain-age prediction from M/EEG resting-state signals
Population-level modeling can define quantitative measures of individual aging by applying machine learning to large volumes of brain images. These measures of brain age, obtained from the general population, helped characterize disease severity in neurological populations, improving estimates of diagnosis or prognosis. Magnetoencephalography (MEG) and Electroencephalography (EEG) have the potential to further generalize this approach towards prevention and public health by enabling assessments of brain health at large scales in socioeconomically diverse environments. However, more research is needed to define methods that can handle the complexity and diversity of M/EEG signals across diverse real-world contexts. To catalyse this effort, here we propose reusable benchmarks of competing machine learning approaches for brain age modeling.